Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DDX17

Cell type

Cell type Class
Pluripotent stem cell
Cell type
NTERA-2
Primary Tissue
Testis
Site of Extraction
lung
Tissue Diagnosis
Carcinoma, Embryonal

Attributes by original data submitter

Sample

source_name
NTERA2
cell type
Pluripotent stem cells
chip antibody
DDX17 (Bethyl Laboratories, A300-509A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sheared chromatin was prepared by ChIP-IT Express kit (Active Motif, #53008) and immunoprecipitated by DDX5 or DDX17 antibody. The library preparation was performed using MicroPlex Library Preparation kit (Diagenode, C05010010).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
195838466
Reads aligned (%)
86.5
Duplicates removed (%)
77.8
Number of peaks
9168 (qval < 1E-05)

hg19

Number of total reads
195838466
Reads aligned (%)
86.0
Duplicates removed (%)
78.7
Number of peaks
8966 (qval < 1E-05)

Base call quality data from DBCLS SRA